Install Homebrew 

/bin/bash -c “$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/HEAD/install.sh)”

Homebrew set path

echo ‘eval “$(/opt/homebrew/bin/brew shellenv)”‘ >> ~/.zprofile
eval “$(/opt/homebrew/bin/brew shellenv)”

Install essential packages

brew install python netpbm cmake gfortran libpng jpeg expat freetype  fontconfig openmotif libomp gsl glib pkg-config gcc libiconv autoconf libxt mesa mesa-glu libxpm

Install XQuartz

brew install –cask xquartz

Add Python to PATH for zsh

export PATH=${PATH}:/opt/homebrew/opt/python/libexec/bin
echo ‘export PATH=${PATH}:/opt/homebrew/opt/python/libexec/bin’ >> ~/.zshrc

Install matplotlib via pip

pip install matplotlib

Install R

https://cran.yu.ac.kr/bin/macosx/ <- download
/usr/sbin/softwareupdate –install-rosetta

Install AFNI

curl -O https://raw.githubusercontent.com/afni/afni/master/src/other_builds/OS_notes.macos_12_b_user.tcsh
tcsh -xef OS_notes.macos_12_b_user.tcsh |& tee out.mac_12_b_user.txt